Media Summary: In lesson we look at installing R packages from CRAN and Bioconductor, we discuss the Tidyverse and we see our first ... Countdown: 0:00 Introduction: 5:00 In lesson I describe the content of a SAM (Sequence Alignment/Map) file, and we explore ... In lesson I give an overview of RNA-Seq for profiling and quantifying mRNA, and we install the SRA Toolkit for downloading ...
3 Lockdown Learning Bioinformatics Along - Detailed Analysis & Overview
In lesson we look at installing R packages from CRAN and Bioconductor, we discuss the Tidyverse and we see our first ... Countdown: 0:00 Introduction: 5:00 In lesson I describe the content of a SAM (Sequence Alignment/Map) file, and we explore ... In lesson I give an overview of RNA-Seq for profiling and quantifying mRNA, and we install the SRA Toolkit for downloading ... In lesson we import our RNA-Seq counts (generated by Salmon in lesson ) into R using tximport. This includes a brief ... Countdown: 0:00 Introduction: 5:17 BioMart Web Site: 15:09 BioMart in R: 23:47 Joining data: 1:00:23 In lesson we retrieve ... In lesson we use Jalview (jalview.org) to explore the MSA we built in . Jalview is installed using conda, and we also see ...
In lesson 13 we will edit the script we wrote in to run the muscle multiple sequence aligner which we installed with Conda in ... Countdown: 0:00 Introduction: 5:00 Install BCFTools: 9:15 bcftools mpileup: 13:00 bcftools call: 36:55 bcftools norm: 53:13 bcftools ... Countdown: 0:00 Introduction: 2:36 DataFrame vs data.frame: 8:06 DESeq2 filtering: 12:00 On log2 fold change: 28:38 Other ...
