Media Summary: Presenter: Dr. Jiyao Wang, NCBI. You can download the slides here: ... As part of our JoVE manuscript on biomolecular In this example we will be looking at an SH2 domain and how it binds a peptide with a phosphorylated tyrosine. The structure has ...

Icn3d Tutorial Active Site Modeling - Detailed Analysis & Overview

Presenter: Dr. Jiyao Wang, NCBI. You can download the slides here: ... As part of our JoVE manuscript on biomolecular In this example we will be looking at an SH2 domain and how it binds a peptide with a phosphorylated tyrosine. The structure has ... We demonstrate how to find an example of a hydrophobic interaction and confirm that it is a hydrophobic interaction by measuring ... This shows how to color each atom by element and label the atoms with the one letter code for the element.

Photo Gallery

iCn3D Tutorial: Active Site Modeling
iCn3D demo
iCn3D basics
PyMOL Tutorial: Active Site Modeling
iCn3D Viewer Tutorial, Part 1
Using iCn3D to explore a protein structure
Tutorial of iCn3D structure viewer , Part 1
Using iCn3D to look at hydrophobicity
Enzyme Active Site Modeling using Molecular Visualization Freeware | Protocol Preview
iCn3D Viewer Tutorial, Part 2
Finding and identifying hydrophobic interactions in iCn3D
iCn3D Tutorial, Sep 2022
View Detailed Profile
iCn3D Tutorial: Active Site Modeling

iCn3D Tutorial: Active Site Modeling

This

iCn3D demo

iCn3D demo

Presenter: Dr. Jiyao Wang, NCBI. You can download the slides here: ...

iCn3D basics

iCn3D basics

I demonstrate some basic functions in

PyMOL Tutorial: Active Site Modeling

PyMOL Tutorial: Active Site Modeling

As part of our JoVE manuscript on biomolecular

iCn3D Viewer Tutorial, Part 1

iCn3D Viewer Tutorial, Part 1

iCn3D

Using iCn3D to explore a protein structure

Using iCn3D to explore a protein structure

In this example we will be looking at an SH2 domain and how it binds a peptide with a phosphorylated tyrosine. The structure has ...

Tutorial of iCn3D structure viewer , Part 1

Tutorial of iCn3D structure viewer , Part 1

You can launch

Using iCn3D to look at hydrophobicity

Using iCn3D to look at hydrophobicity

This video shows how to use

Enzyme Active Site Modeling using Molecular Visualization Freeware | Protocol Preview

Enzyme Active Site Modeling using Molecular Visualization Freeware | Protocol Preview

Watch the Full Video at ...

iCn3D Viewer Tutorial, Part 2

iCn3D Viewer Tutorial, Part 2

iCn3D

Finding and identifying hydrophobic interactions in iCn3D

Finding and identifying hydrophobic interactions in iCn3D

We demonstrate how to find an example of a hydrophobic interaction and confirm that it is a hydrophobic interaction by measuring ...

iCn3D Tutorial, Sep 2022

iCn3D Tutorial, Sep 2022

The slide is at https://www.ncbi.nlm.nih.gov/Structure/

Making an element color key in iCn3D

Making an element color key in iCn3D

This shows how to color each atom by element and label the atoms with the one letter code for the element.